Files listing with short decriptions

last editted July 7, 2000 -JPL
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Main applications files:
-----------------------------------------------------
generate_chains.c - generates the chain_1.dat and chain_2.dat files, 
                    containing the half-chains.
analyze_chains.c  - analyzes the chain_1.dat and chain_2.dat files.


Extra applications files (not required to use Cyclize):
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cyclize_whole_chains.c - calculates whole chain kinetics (doesn't use the 
   half-chain speed-up method). 
show_chains.c     - displayes chains containined in the XX file.
view_0k.c         - displays a zero Kelvin image of your DNA.
view_chains.c     - displays a chain.
test.c            - small test application.

Support files:
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cyclize_lib.c     - Main Cyclize subroutines are contained here.  Applications 
                    should only call routines contained within this library 
                    file.
math_routines.c   - A variety of small mathematical subroutines, used by
                    cyclize_lib.c
fit.c             - The Cyclize-specific fitting routines for the radial, 
                    axial, and torional distribution functions.  These 
                    routines are used by cyclize_lib.c.
odr.c             - The fitting routine interface between fit.c and the 
                    ODRPACK library, this was necessary b/c the interface is 
                    quite complex, and I did not want to put a lot of the 
                    complexity in fit.c.
nrutil.c          - The freely available numeric recipies matrix generation
                    library.
