find_positions

Usage:
$search_sequence = "GCGATTGCTAAATGC";
@positions = &find_positions( \%seq, $search_sequence );

Action:
Finds the position numbers of the base pairs in %seq which match the sequence found in $search_sequence.

This is useful in conjunction with &read_sequence and &fill_params for finding and setting the parameters of specific sequences. See the samples scripts for an sample of using this in a useful script.