This is the Midas PDB file viewer generated (using the scripts show_chains.pl) graphical view of one of the successful cyclizing molecules. The B-form region of the DNA is colored white and the Atract region is colored red. The second picture is simply the "wire view" of the first picture.

bass (lapham):> show_chains sequence.in chain_cyclized.dat 1
bass (lapham):> rotmat2pdb.pl chain_1.rotmat
bass (lapham):> midas chain_1.pdb

bass (lapham):> show_chains sequence.in chain_cyclized.dat 1
bass (lapham):> rotmat2pdb.pl wire chain_1.rotmat
bass (lapham):> midas chain_1.pdb