YARM: Yet Another Relaxation Matrix program
A program for performing nuclear spin relaxation calculations
Sections:
Main |
Using YARM |
Subroutines |
Theory |
Samples |
Resources
Subsections:
Introduction
Sample Headers:
Here are a sample headers for YARM scripts.
Sample Scripts:
Here are a few useful sample YARM scripts
Model validation: analysis of a Model vs NOE data
Statistical analysis: entire molecule
Statistical analysis: per residue
Correlation plot
Model refinement: using NOE data to derive a Model
Structure refinement
Correlation time refinement
Intramolecular motion (order parameter) refinement
Simple utilities
Measuring distances between all protons
Measuring a specific distance
Measuring angles WRT principal axis
Ordering atoms names
Sample structures:
Here are a few PDB files that are used in the sample scripts above.
A-form Dickerson dodecamer PDB
B-form Dickerson dodecamer PDB
XTAL Dickerson dodecamer PDB
NMR Dickerson dodecamer PDB